PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g06090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 292aa    MW: 32952.5 Da    PI: 8.4163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g06090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-13142191455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR++i + +eeL  +lP          l+K++iL k+++Y+k+Lq
  Vradi09g06090.1 142 QHIMAERKRREKISTMMEELSAMLPVkY---LYVQLDKISILGKTIDYVKHLQ 191
                      699***********************77...8999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-15133203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.738138190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14141210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.80E-13143194No hitNo description
SMARTSM003531.4E-12144196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVHSHGVTFV NRLLSIFPWC QRFCTHLFEG REKVDIDPPN SKEMNDDELH LFNEHDVNSL  60
EEELMKGEST SGFDINNKKK NNIDGGSCLK TNTQHANSGS EKHICSSCTL AFEDSTVVSN  120
VADEALHAKP EKKRSTFHQM NQHIMAERKR REKISTMMEE LSAMLPVKYL YVQLDKISIL  180
GKTIDYVKHL QNRVNDLQEQ KRKTESKCSK NNGSNVNISE NFPKVDASVS GKDVRIRVIC  240
DRRQHIVAKL FSKLESHHLS IVRSSVLPLG SSALNISIIC QVQSNVIHAK G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131150KKRSTFHQMNQHIMAERKRR
2146151ERKRRE
3147152RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-159AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516222.11e-165PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0L9VUX01e-126A0A0L9VUX0_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1824835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-21bHLH family protein